Gene Expression Mining Server

Chang-Jiun Wu and Dr. Simon Kasif


Required Fields:

Filtering

Email address:
Do nothing
Remove genes always
  Gene Expression Data file: (example)
  Size constraint(min number/fraction of samples):  min:  max: Normalization for every gene:
  Width constraint:   applied to each  row column
 Do nothing
 To a range from 0 to 1
 Mean=0 and variance=1
  Number of biclusters requested:  
  Lower limit of the total score/number of genes in the bicluster:
Optional Parameters: Only Non-redundant Biclusters?
  Compute p-value from permutation test: 
 Yes, report unique biclusters
 No, report all results
  Gene Weighting Score File: (example)
  Sample Class Labeling File: (example) Mask Older Biclusters?
  Seed number for Random Number Generator:
 No masking
 Selected genes on conditions
 Selected conditions 
 Selected genes
Values that will be treated as missing data: e.g. "0, 99, -100"  
Scoring function: #rows  #grids  [precision enrichment with labeled genes]
    

  The Bioinformatics Program at BU  

            This web server is supported in part by NSF grants DBI-0239435 and ITR-048715, NHGRI grant #1R33HG002850-01A1 and NIH grant U54 LM008748.