Probabilistic protein function prediction from heterogeneous genome-wide data,
Naoki Nariai, Eric D. Kolaczyk and Simon Kasif,
PLoS ONE, 2(3): e337 (2007).
Contact: Naoki Nariai (nariai at bu.edu)
Gene expression data
- Cell cycle data, download.
Spellman PT, Sherlock G, Zhang MQ, Iyer VR, Anders K, et al. (1998) Comprehensive identification of cell
cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell 9:
3273-3297
- DNA damage response data, download.
Gasch AP, Huang M, Metzner S, Botstein D, Elledge SJ, et al. (2001) Genomic expression responses to
DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p. Mol Biol Cell 12: 2987-3003.
- Rosetta data, download.
Hughes TR, Marton MJ, Jones AR, Roberts CJ, Stoughton R, et al. (2000) Functional discovery via a compendium of
expression profiles. Cell 102: 109-126.
- Stress response data, download.
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, et al. (2000) Genomic expression programs in the
response of yeast cells to environmental changes. Mol Biol Cell 11: 4241-4257.
Protein-protein interaction (PPI) data
Protein motif information
Gene knock-out phenotype information
Protein localization information
GO term data
ISA hierarchy of GO terms
How to run the prediction program
Naoki Nariai
nariai at bu.edu